Table 1 Clinod output formats
From: NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins
Format name | Format Description | Example outputa |
|---|---|---|
MINIMAL | Sequence name and number of NOLS predicted | > NOL12 NOLS_segment_number: 2 |
SHORT | Same as MINIMAL plus, start and end position of each NOLS | > NOL12 NOLS_segment_number: 2 NOLS_segments_positions: 1-20, 165-213 |
MEDIUM (default) | Same as SHORT plus the sequences of all NOLS | > NOL12 NOLS_segment_number: 2 NOLS_segments_positions: 1-20, 165-213 NOLS_segments: MGRNKKKKRDGDDRRPRLVL, TASLHAHSRKKVKRRLTGKARHSGE |
FULL | Same as MEDIUM plus the predictor score for each residue in the sequence | > NOL12 NOLS_segment_number: 2 NOLS_segments_positions: 1-20, 165-213 NOLS_segments: MGRNKKKKRDGDDRRPRLVL, TASLHAHSRKKVKRRLTGKARHSGE 0.87 0.79 0.69 ... |
COMPLETE | Same as FULL plus the input sequences | > NOL12 MGRNKKKKRDGDDRRPRLVLSFDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKEEQRKLREERHQEYLKMLAEREEALE... NOLS_segment_number: 2 NOLS_segments_positions: 1-20, 165-213 NOLS_segments: MGRNKKKKRDGDDRRPRLVL, TASLHAHSRKKVKRRLTGKARHSGE 0.87 0.79 0.69 ... |