From: Strategies for aggregating gene expression data: The collapseRows R function
Fig | Analysis | Data sets used | 1. max | 2. var | 3. kMax | 4. kVar | 5. ME | 6. Avg |
---|---|---|---|---|---|---|---|---|
1 | Summary | Hypothetical data | X | - | X | - | - | - |
2 | Collapsing probes to genes | 18 Human Brain # 20 Mouse Brain % 5 Human Blood $ | X | X | X | X | - | - |
3 | Choosing module centroids | 7 Human Brain # 8 Mouse Brain % 5 Human Blood $ | X | - | X | - | X | - |
4 | Predicting cell type proportions | Abbas et al 2009 (cell lines) | X | - | X | - | X | X |
5 | Predicting cell type proportions | Grigoryev et al 2010 (whole blood) | X | - | X | - | X | X |