From: RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
 | SE | PE | ||||||
---|---|---|---|---|---|---|---|---|
Method | Alignment time | Quant. time | Total time | Peak Memory | Alignment time | Quant. time | Total time | Peak Memory |
RSEM | 24 | 50 | 74 | 1.1 | 15 | 50 | 66 | 1.1 |
IsoEM | 5 | 6 | 12 | 12 | 14 | 10 | 24 | 14 |
Cufflinks | 33 | 3 | 36 | 2.0 | 60 | 6 | 66 | 2.0 |
rQuant | 33 | 183 | 216 | 2.0 | Â | Â | Â | Â |
RSEM v0.6 | 9 | 22 | 31 | 1.1 | Â | Â | Â | Â |