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Table 4 Accuracies obtained from RNA-Seq data sets with various properties

From: RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Species Seq. Error Read type Read length Read number
(×106)
Throughput
(MB)
MPE 10% EF FP
M N SE 35 20 700 3.1/4.2/7.1 13.7/25.0/44.0 1.0/1.8/10.9
M N SE 70 20 1400 3.1/4.1/6.0 13.6/23.9/40.4 0.8/1.5/8.2
M N PE 35 20 1400 3.0/3.9/4.9 13.3/21.9/34.2 1.1/1.8/13.4
M N SE 35 40 1400 2.3/3.1/4.8 8.4/18.5/35.8 0.7/1.3/10.5
M Y SE 35 20 700 3.1/4.2/6.9 14.1/25.2/43.0 1.1/1.9/13.2
M Y SE 70 20 1400 3.0/4.0/6.0 14.2/24.4/40.6 1.1/1.6/9.5
M Y PE 35 20 1400 3.0/3.9/5.1 14.0/22.9/35.5 1.3/1.9/12.1
M Y SE 35 40 1400 2.2/3.0/5.0 8.5/18.4/35.7 0.9/1.5/11.3
H N SE 35 20 700 4.0/7.8/14.3 20.2/43.5/58.6 3.6/8.0/21.6
H N SE 70 20 1400 3.9/7.3/11.9 19.3/41.0/54.4 3.5/7.0/17.3
H N PE 35 20 1400 3.7/6.2/9.0 17.0/36.4/47.3 3.7/6.4/14.0
H N SE 35 40 1400 2.9/5.7/10.1 13.4/35.4/50.3 2.7/6.3/20.3
H Y SE 35 20 700 3.9/7.7/14.8 19.5/43.2/59.3 3.9/8.1/20.8
H Y SE 70 20 1400 3.8/7.2/12.4 19.2/40.8/55.2 3.9/7.1/17.7
H Y PE 35 20 1400 3.8/6.5/9.2 19.0/37.8/48.2 4.2/6.4/13.9
H Y SE 35 40 1400 2.9/5.6/10.3 12.8/35.5/50.8 3.0/6.3/18.8
  1. Accuracy of abundance estimates from RNA-Seq data sets varying in species (H = human, M = mouse), sequencing error, type (SE or PE) of reads, number of reads, and length of reads. Values are given as gene/global isoform/within-gene isoform.