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Table 2 Functional categories with maximum temporal variation

From: NETGEM: Network Embedded Temporal GEnerative Model for gene expression data

REF

MUT

JOINT

32.01.04

32.01.04

32.01.04

20.09.03

20.09.03

20.09.03

10

16.21

16.21

16.21

32.05.05

11.04.02

11.04.02

10

10

32.05.05

11.04.02

12

20.01.27

40.01.05

32.05.05

30

30

30

16.03.03

10.01.09

16.03.03

20.09.07

10.03.01

32.07

12

14.13.01

20.09.07

32.07

20.01.10

40.01.03

20.01.15

16.03.03

20.01.27

42.04.05

20.09.07

10.01.09

34.07.02

42.04.03

34.07.02

10.03.01

16

32.07.07

40.01.03

34.07.02

16.02

10.01.09

12.01.01

42.04.05

42.29

01.03.01

42.29

32.07.07

32.07.07

14.04

  1. Table 2 shows the MIPS IDs of the top 20 functional categories which show the maximum amount of variation in time for REF or MUT strains, evaluated independently and Jointly using the damping model. This is obtained by considering the total probability of change in the transition probability matrix Q h i.e. . The categories indicated in bold font are those which are known to have been enriched in the original dataset [30].