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Table 1 Classification of supervised taxonomic assignment approaches

From: Classifying short genomic fragments from novel lineages using composition and homology

  Homology Composition Hybrid
Rank-specific Best BLAST match [12] NN (this paper)
NB [18], Phymm [17]
NB-BL (this paper)
PhymmBL [17]
Rank-flexible LCA [11], MTR [13]
q-LCA [14]
Treephyler [15]
CARMA [16]
ε-NB (this paper)
PhyloPythia [25]
PhyloPythiaS [26]
TACOA [27]
BLASTN + NB (this paper)
BLASTN + ε-NB (this paper)
LCA + NB (this paper)
LCA + ε-NB (this paper)