Skip to main content

Table 3 Class-level assignment of EBPR reads with A. phosphatis included or excluded from the training set

From: Classifying short genomic fragments from novel lineages using composition and homology

  BLASTNa
(inc.)
BLASTNa
(excl.)
NB-BLa
(inc.)
NB-BLa
(excl.)
LCAb
(inc.)
LCAb
(excl.)
LCAb+NB
(inc.)
LCAb+NB
(excl.)
Betaproteobacteria 61.9 20.1 67.7 37.8 61.4 18.4 52.3 9.0
Gammaproteobacteria 5.4 8.2 10.0 19.8 5.1 7.2 1.9 2.5
Alphaproteobacteria 3.2 4.6 6.8 15.1 3.0 4.0 2.3 2.6
Deinococci 3.0 6.8 0.57 2.0 2.9 6.4 0.02 0.02
Actinobacteria 0.64 1.2 2.4 6.9 0.56 0.97 0.20 0.22
Other 1.1 1.6 12.5 18.4 0.84 1.6 73.2 0.26
Unclassified 24.8 57.5 0.0 0.0 26.2 61.4 42.3 85.4
  1. a E-value < 10-5; b E-value < 10-5, p = 15%
  2. Results are shown for the 5 most abundant lineages identified by BLASTN.