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Table 1 Memory usage and Time for whole genome data

From: Efficient counting of k-mers in DNA sequences using a bloom filter

Program

Time (hrs)

Memory (GB)

BFCounter

23.82

42

Jellyfish

8.03

71

Naive*

>26.38

>128

  1. Memory and time usage for the 1000 Genomes data set (40-fold coverage of individual NA19240). *The naive version ran out of memory after processing 84.7% of the reads.
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BMC Bioinformatics

ISSN: 1471-2105

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