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Table 11 The results of the TC-PINs corresponding to various threshold values and the static PPI network.

From: A comparison of the functional modules identified from time course and static PPI network data

 

#Periodic Genes

#Modules

Mp Mk f-measure

TC-PINs Threshold = 2.0

2589

1777

343

173

0.29

TC-PINs Threshold = 1.6

2786

1939

386

183

0.30

TC-PINs Threshold = 1.4

2893

1960

397

203

0.31

TC-PINs Threshold = 1.2

3001

2060

448

218

0.33

TC-PINs Threshold = 1.0

3108

2042

463

226

0.35

TC-PINs Threshold = 0.9

3167

2114

451

224

0.33

TC-PINs Threshold = 0.7

3273

2063

443

232

0.33

TC-PINs Threshold = 0.5

3377

1765

345

222

0.30

TC-PINs Threshold = 0.3

3487

1558

290

210

0.28

TC-PINs Threshold = 0.02

3552

980

177

194

0.26

Static PPI network

 

932

175

197

0.26

  1. The second column in Table 11 refers to the number of selected periodic genes over various threshold values. The third column shows the number of predicted modules which match at least a real complex. The fourth column indicates the number of the real complexes that match at least a predicted module. The last column is the f-measure values of the predicted modules.