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Table 2 Summary of cluster sizes for pb f mosquitoes as obtained through Gepoclu.

From: Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis

PBF UP-REGULATED

NBF-3 h UP

3-24 h UP

24-48 h UP

48-72 h UP

72-96 h UP

96 h-15 d UP

n. of clustered genes/total genes

0/1883

2609/3667

589/1422

145/542

618/1340

0/2

% of genes in clusters n = 2

NA

29.8%

61.8%

73.1%

59.2%

NA

% of genes in clusters n = >3

NA

70.2%

38.2%

26.9%

40.9%

NA

% of genes in clusters n => 4

NA

46.6%

13.2%

6.2%

20.1%

NA

PBF DOWN-REGULATED

NBF-3 h

3-24 h

24-48 h

48-72 h

72-96 h

96 h-15 d

 

DOWN

DOWN

DOWN

DOWN

DOWN

DOWN

n. of clustered genes/total genes

856/1835

1123/2179

512/1221

133/528

1014/1824

42/179

% of genes in clusters n = 2

53.3%

41.5%

57.8%

57.1%

47.9%

47.6%

% of genes in clusters n = >3

46.7%

58.5%

42.2%

42.9%

52.1%

52.4%

% of genes in clusters n = >4

22.5%

32.6%

15.8%

33.8%

23.1%

23.8%

  1. Clustering applied to females, up-regulated and down-regulated genes. Gene expression data from Microarray.
  2. NBF: non-blood fed female mosquitoes