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Table 1 Preliminary constraints

From: A systems approach to identifying correlated gene targets for the loss of colour pigmentation in plants

 

Reactions

mg/kg

Reaction Rate

(mmol/kg*h)

Growth rate: lignin composition [38]

mue

 

2.70E-02

Flavonoid products: Grapes[39, 40]

   

Anthocyanins

   

cyanidin 3-glucoside (cpd1f-766)

RXN1F-775

28.9

6.43E-02

cyanidin 3-p-coumaroylglucoside (cpd-7866)

RXN-8204

1.4

2.35E-03

Flavonols

kaempferol-3-glucoside (cpd1f-453)

RXN1F-461

97.7

1.64E-01

quercetin-3-glucoside (cpd1f-437)

RXN1F-462

37.3

8.03E-02

Flavan-3-ols (proanthocyanidins)

[40.4]

[1.43E-01]

epiafzelechin: CPD-10413

RXN-9724

 

3.58E-02

2,3-cis-epicatechin: CPD-7630

RXN-9725

 

3.58E-02

afzelechin: CPD-1962

RXN-1481

 

3.58E-02

2,3-trans-catechin: CPD-1961

RXN-1484

 

3.58E-02

Other products: Other plants[41–44]

Range

luteolin (5734-TETRAHYDROXYFLAVONE)

  

[0, 5.02E+01]

apigenin (cpd-431)

  

[0, 1.44E+01]

methylsalicylate

  

[0, 1.15E-02]

methylbenzoate

  

[0, 2.27E+01]

4-coumarate

  

[0, 1.84E+00]

Caffeate

  

[0, 3.10E-01]

Ferulate

  

[0, 4.50E-01]

  1. Table 1 contains the preliminary constraint values compiled from literature [39–44], as referenced in the table, and used to generate network input fluxes that are then kept constant for the different MCSs.