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Table 1 Results of scoring the decoys in the Varani bound docking set

From: DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking

Complex PDB code RMSD threshold (decoy vs native) Number of decoys below threshold
(per 2,000)
Correlation coefficient
    DARSI-RNP potential
(std. error)
QUASI-RNP potential
(std. error)
Varani potential
(std. error)
Fernandez potential
(std. error)
1urn 5 726 0.77 (0.024) 0.7 (0.027) 0.37 (0.035) -0.56 (0.031)
  10 1457 0.83 (0.015) 0.79 (0.016) 0.27 (0.025) -0.24 (0.025)
  20 1967 0.81 (0.013) 0.79 (0.014) 0.21 (0.022) -0.1 (0.022)
1ec6 5 907 0.81 (0.019) 0.79 (0.020) 0.57 (0.027) -0.08 (0.033)
  10 1446 0.9 (0.011) 0.89 (0.012) 0.38 (0.024) -0.05 (0.026)
  20 1979 0.87 (0.011) 0.86 (0.011) 0.31 (0.021) -0.02 (0.022)
1fxl 5 881 0.94 (0.012) 0.95 (0.011) 0.87 (0.017) 0.61 (0.027)
  10 1366 0.96 (0.008) 0.96 (0.008) 0.82 (0.015) 0.74 (0.018)
  20 1758 0.93 (0.009) 0.94 (0.008) 0.7 (0.017) 0.83 (0.013)
1cvj 5 936 0.96 (0.009) 0.96 (0.009) 0.5 (0.028) 0.85 (0.017)
  10 1217 0.97 (0.007) 0.97 (0.007) 0.61 (0.023) 0.92 (0.011)
  20 1947 0.93 (0.008) 0.93 (0.008) 0.46 (0.020) 0.9 (0.010)
1jid 5 828 0.58 (0.028) 0.58 (0.028) 0.35 (0.033) 0.33 (0.033)
  10 1485 0.72 (0.018) 0.71 (0.018) 0.3 (0.025) 0.39 (0.024)
  20 1978 0.7 (0.016) 0.69 (0.016) 0.27 (0.022) 0.29 (0.022)
Mean 5 855.6 0.81 0.8 0.53 0.23
  10 1394.2 0.88 0.87 0.47 0.35
  20 1925.8 0.85 0.84 0.39 0.38
  1. Correlation coefficients were calculated for scatter plots from Figure 4.