Table 1 Simulated linkage regions and the regions detected by Haplo2Ped
From: Haplo2Ped: a tool using haplotypes as markers for linkage analysis
| Â | Â | Haplo2Ped | Merlin | Â | ||
|---|---|---|---|---|---|---|
Chr | Expected region a (bp) | Detected region (bp) | LOD score | Detected region (bp) | LOD score | SNPLINK b |
1 | 216,655,820-217,662,693 | 216,631,505-217,703,573 | 3.010 | 216,907,787-217,662,692 | 1.773 | 217,005,036-217,668,715 |
5 | 38,764,018-41,787,459 | 38,631,518-42,305,421 | 3.010 | 38,854,039-41,712,049 | 1.777 | 38,886,647-42,163,690 |
9 | 27,316,060-31,341,194 | 27,143,875-31,616,167 | 3.010 | 27,319,623-31,394,530 | 1.777 | 27,306,972-31,369,980 |
13 | 96,346,535-101,352,382 | 96,316,072 101,404,566 | 3.010 | 96,328,971-101,304,534 | 1.778 | 96,836,579-101,356,932 |
17 | 50,661,600-54,645,983 | 50,621,012-54,818,763 | 3.010 | 50,690,828-58,850,202 | 1.804 | 50,661,601-54,726,213 |
21 | 21,812,513-26,812,202 | 21,781,794-27,090,473 | 3.010 | 21,833,903-26,812,201 | 1.778 | 21,812,514-26,818,797 |
1 | / | / | / | 55,489,086-62,400,262 | 1.778 | / |
5 | / | / | / | 10,529,760- 11,796,160 | 1.778 | / |
9 | / | / | / | 73,498,210- 80,047,165 | 1.778 | / |