Skip to main content

Table 1 Performance of Decomposition techniques on the Solutions of the guide tree

From: Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment

Reference No.

Name of Dataset

Guide-tree

Decomp_2

Decomp_3

Decomp_4

  

WSPM

Correspon-ding BAliscore

WSPM

Correspond-ing BAliscore

WSPM

Correspond-ing BAliscore

WSPM

Correspond-ing BAliscore

Ref. 2

1aboA

-1001.96

0.552

-922.417

0.566

-954.859

0.573

-893.733

0.587

 

1idy

17.78

0.874

17.78

0.874

128.604

0.948

57.494

0.880

 

1csy

-394.56

0.460

-375.955

0.568

-293.088

0.671

-279.613

0.747

 

1r69

-153.23

0.716

-122.574

0.750

-112.983

0.780

-109.973

0.723

 

1tvxA

118.32

0.916

118.322

0.936

118.322

0.936

127.866

0.941

 

1tgxA

-141.68

0.798

-28.893

0.801

-26.709

0.815

54.808

0.809

 

1ubi

-245.02

0.641

-151.429

0.618

-213.452

0.661

-215.21

0.671

 

1wit

-572.81

0.673

-547.512

0.654

-551.823

0.670

-456.085

0.741

 

2trx

411.79

0.944

423.688

0.948

567.091

0.945

546.10

0.977

 

1sbp

-226.99

0.710

-226.99

0.710

-200.282

0.733

-163.487

0.710

 

1havA

-666.52

0.783

-499.625

0.787

-552.664

0.787

-470.297

0.793

 

1uky

-368.69

0.651

-227.468

0.634

-320.261

0.629

-213.937

0.710

 

2hsdA

-1139.99

0.679

-848.958

0.790

-1020.644

0.729

-1015.369

0.721

 

2pia

-564.48

0.811

-466.756

0.799

-485.944

0.801

-341.627

0.764

 

3grs

-649.94

0.698

-577.104

0.714

-609.335

0.709

-460.447

0.746

 

Kinase

-1112.18

0.763

-973.132

0.741

-845.541

0.771

-924.093

0.747

 

1ajsA

1433.11

0.879

1481.384

0.901

1504.135

0.895

1502.130

0.881

 

1cpt

-1406.04

0.732

-1406.03

0.732

-1392.476

0.725

-1200.642

0.751

 

1lvl

-2855.24

0.705

-2855.241

0.705

-2281.80

0.726

-2687.77

0.749

 

1pamA

-1895.88

0.699

-1238.72

0.750

-716.222

0.795

-1311.726

0.720

 

1ped

1556.41

0.890

1556.407

0.902

1610.442

0.901

1612.574

0.907

 

2myr

664.52

0.734

753.00

0.757

775.25

0.751

760.204

0.754

 

4enl

-42.30

0.802

12.135

0.812

116.309

0.822

66.895

0.824

Ref. 3

1idy

-1408.27

0.236

-1378.605

0.303

-1278.872

0.256

-1274.323

0.447

 

1r69

-1735.897

0.541

-1662.407

0.551

-1735.897

0.562

-1735.897

0.567

 

1ubi

-1417.25

0.308

-1381.00

0.264

-1271.455

0.406

-1396.996

0.321

 

1wit

-1059.74

0.553

-849.307

0.628

-1015.695

0.644

-806.003

0.676

 

1uky

-5417.19

0.364

-4981.878

0.387

-5283.305

0.415

-5417.186

0.364

 

kinase

-1112.18

0.736

-973.132

0.741

-845.541

0.771

-924.093

0.747

 

1ajsA

-4597.06

0.264

-4597.06

0.264

-4551.029

0.264

-4597.06

0.264

 

1pamA

-4217.03

0.680

-3997.312

0.687

-2981.082

0.746

-4107.983

0.694

 

1ped

-2296.46

0.574

-1789.276

0.577

-1512.652

0.682

-1832.71

0.589

 

2myr

-8545.30

0.318

-8516.803

0.359

-8163.882

0.355

-7483.46

0.347

 

4enl

-783.58

0.600

-582.216

0.607

-216.91

0.635

-470.220

0.618