Table 3 Performance of Decomposition techniques with Genetic Algorithm
From: Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment
| Â | Â | VDGA Without Decomposition | VDGA Decomp_2 | VDGA Decomp_3 | VDGA Decomp_4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Reference No. | Name of Dataset | Best WSPM | Ave. WSPM | Corresponding BAliscore | Best WSPM | Ave. WSPM | Corresponding BAliscore | Best WSPM | Ave. WSPM | Corresponding BAliscore | Best WSPM | Ave. WSPM | Corresponding BAliscore |
Ref. 2 | 1aboA | -377.456 | -454.63 | 0.796 | -301.74 | -355.41 | 0.723 | -234.25 | -278.37 | 0.791 | -334.12 | -448.12 | 0.679 |
| Â | 1idy | 408.98 | 380.81 | 0.989 | 489.85 | 480.74 | 0.981 | 516.31 | 498.62 | 0.992 | 430.70 | 303.702 | 0.992 |
| Â | 1csy | -69.93 | -101.09 | 0.764 | -62.52 | -66.29 | 0.731 | -51.203 | -59.42 | 0.885 | -71.592 | -86.019 | 0.831 |
| Â | 1r69 | -28.937 | -50.94 | 0.965 | -1.453 | -5.086 | 0.859 | 18.728 | 10.32 | 0.934 | 33.625 | 22.863 | 0.874 |
| Â | 1tvxA | 334.38 | 315.46 | 0.920 | 364.01 | 321.49 | 0.944 | 387.32 | 384.51 | 0.974 | 384.79 | 286.39 | 0.944 |
| Â | 1tgxA | 342.38 | 307.97 | 0.878 | 339.61 | 321.15 | 0.867 | 367.42 | 342.23 | 0.878 | 390.56 | 376.289 | 0.850 |
| Â | 1ubi | 36.30 | 4.93 | 0.767 | 42.1 | 6.782 | 0.732 | 48.14 | 22.39 | 0.778 | 45.71 | 39.649 | 0.794 |
| Â | 1wit | -120.21 | -183.60 | 0.851 | -108.91 | -199.764 | 0.875 | -102.45 | -113.59 | 0.815 | -115.34 | -186.919 | 0.774 |
| Â | 2trx | 903.23 | 855.29 | 0.986 | 929.39 | 905.042 | 0.959 | 957.92 | 945.45 | 0.986 | 944.13 | 921.391 | 0.986 |
| Â | 1sbp | -19.79 | -75.19 | 0.765 | -12.58 | -18.98 | 0.782 | -34.26 | 45.66 | 0.772 | -29.019 | -34.766 | 0.778 |
| Â | 1havA | 49.62 | 33.57 | 0.879 | 189.46 | 213.42 | 0.884 | 227.25 | 147.09 | 0.846 | 240.39 | 210.34 | 0.884 |
| Â | 1uky | -84.92 | -121.98 | 0.808 | 21.91 | -9.297 | 0.845 | 69.57 | 42.91 | 0.891 | -76.23 | -106.861 | 0.872 |
| Â | 2hsdA | -389.79 | -443.99 | 0.796 | -365.25 | -426.28 | 0.856 | -309.64 | -355.36 | 0.829 | -334.22 | -391.32 | 0.742 |
| Â | 2pia | -146.38 | -223.91 | 0.826 | -125.35 | -143.025 | 0.847 | -53.76 | -75.84 | 0.850 | -33.85 | -48.513 | 0.839 |
| Â | 3grs | -142.16 | -210.66 | 0.746 | -118.195 | -142.41 | 0.717 | -136.70 | -164.49 | 0.751 | -69.65 | -131.917 | 0.781 |
| Â | Kinase | -191.16 | -224.46 | 0.799 | -129.92 | -263.61 | 0.825 | -180.11 | -195.82 | 0.888 | -145.51 | -221.963 | 0.812 |
| Â | 1ajsA | 1956.94 | 1920.89 | 0.899 | 1938.87 | 1918.284 | 0.906 | 2011.39 | 1958.0 | 0.905 | 1900.35 | 1827.312 | 0.902 |
| Â | 1cpt | -435.69 | -490.22 | 0.875 | -402.59 | -551.276 | 0.869 | -325.41 | -413.98 | 0.812 | -410.893 | -504.988 | 0.853 |
| Â | 1lvl | -826.15 | -916.93 | 0.781 | -720.022 | -884.03 | 0.803 | -688.34 | -810.04 | 0.819 | -772.43 | -1003.08 | 0.816 |
| Â | 1pamA | -974.64 | -1019.11 | 0.814 | -986.278 | -1040.69 | 0.857 | -941.56 | -1012.69 | 0.863 | -939.83 | -1045.98 | 0.853 |
| Â | 1ped | 1940.82 | 1862.50 | 0.912 | 1911.36 | 18670.39 | 0.935 | 2003.19 | 1996.74 | 0.947 | 1998.13 | 1979.245 | 0.943 |
| Â | 2myr | 13970.32 | 13865.22 | 0.822 | 13991.45 | 13292.104 | 0.806 | 14123.57 | 14115.91 | 0.830 | 14095.12 | 14042.641 | 0.808 |
| Â | 4enl | 1386.81 | 1299.04 | 0.896 | 1161.56 | 1107.331 | 0.890 | 1329.23 | 1248.89 | 0.889 | 920.982 | 895.165 | 0.899 |
Ref. 3 | 1idy | -512.34 | -588.37 | 0.601 | -588.25 | -660.92 | 0.446 | -496.91 | -554.09 | 0.599 | -482.98 | -518.89 | 0.569 |
| Â | 1r69 | -1103.34 | -1174.5 | 0.709 | -1099.76 | -1181.71 | 0.724 | -1081.08 | -1124.14 | 0.733 | -1056.54 | -1083.03 | 0.765 |
| Â | 1ubi | -959.62 | -1004.26 | 0.386 | -948.10 | -1018.84 | 0.398 | -871.85 | -960.94 | 0.414 | -916.78 | -1005.13 | 0.410 |
| Â | 1wit | -223.56 | -263.99 | 0.758 | -319.695 | -332.971 | 0.833 | -241.51 | -309.58 | 0.873 | -233.687 | -273.302 | 0.867 |
| Â | 1uky | -3565.98 | -3662.99 | 0.468 | -3412.58 | -3595.6 | 0.469 | -3181.7 | -3308.02 | 0.481 | -3287.773 | -3328.27 | 0.526 |
| Â | kinase | -294.62 | -357.70 | 0.828 | -225.67 | -276.98 | 0.870 | -153.90 | -213.56 | 0.890 | -193.57 | -248.795 | 0.887 |
| Â | 1ajsA | -4199.49 | -4250.98 | 0.311 | -3375.033 | -3467.24 | 0.383 | -3136.73 | -3463.15 | 0.453 | -3339.93 | -3439.16 | 0.408 |
| Â | 1pamA | -2106.98 | -2163.54 | 0.835 | -1989.045 | -2179.37 | 0.853 | -1843.03 | -2015.55 | 0.788 | -1889.85 | -1903.52 | 0.792 |
| Â | 1ped | -1199.41 | -1251.38 | 0.813 | -683.44 | -811.29 | 0.848 | -411.75 | -457.17 | 0.893 | -721.65 | -801.563 | 0.783 |
| Â | 2myr | -6498.07 | -6574.31 | 0.513 | -6180.015 | -6305.04 | 0.586 | -5523.14 | -5801.53 | 0.651 | -5962.83 | -6103.28 | 0.519 |
| Â | 4enl | -45.86 | -72.34 | 0.800 | 98.51 | 19.426 | 0.836 | 162.46 | 121.04 | 0.866 | 102.08 | 80.624 | 0.866 |