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Table 8 Experiments on Reference 3 Datasets from BAliBase

From: Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment

Reference No. Name of Dataset    PRRP    CLUSTALX    SAGA    DIALIGN    HMMT    SB_PIMA    ML_PIMA    MULTALIGN    PILEUP8    RBT-GA    VDGA_Decomp_2    VDGA_Decomp_3    VDGA_Decomp_4
Ref. 3 1idy    0.000    0.273    0.364    0.000    0.227    0.000    0.000    0.045    0.000    0.546    0.446    0.599    0.569
  1r69    0.905    0.524    0.524    0.524    0.000    0.000    0.905    0.000    0.000    0.374    0.724    0.733    0.765
  1ubi    0.415    0.146    0.585    0.000    0.366    0.000    0.000    0.000    0.268    0.31    0.398    0.414    0.410
  1wit    0.742    0.565    0.484    0.500    0.323    0.645    0.323    0.242    0.210    0.78    0.833    0.873    0.867
  1uky    0.139    0.130    0.269    0.139    0.037    0.083    0.148    0.241    0.083    0.35    0.469    0.481    0.526
  kinase    0.783    0.720    0.758    0.650    0.478    0.541    0.682    0.688    0.599    0.697    0.870    0.890    0.887
  1ajsA    0.128    0.163    0.186    0.000    0.006    0.000    0.000    0.000    0.110    0.18    0.383    0.453    0.408
  1pamA    0.683    0.678    0.579    0.683    0.169    0.546    0.590    0.546    0.754    0.525    0.853    0.788    0.792
  1ped    0.679    0.627    0.646    0.641    0.172    0.450    0.507    0.665    0.722    0.425    0.848    0.893    0.783
  2myr    0.646    0.538    0.494    0.272    0.101    0.278    0.494    0.253    0.310    0.33    0.586    0.651    0.519
  4enl    0.736    0.547    0.672    0.050    0.050    0.393    0.438    0.652    0.498    0.68    0.836    0.866    0.866
Average Score    0.532    0.446    0.506    0.314    0.175    0.267    0.372    0.303    0.323    0.472    0.659    0.695    0.672