Table 2 Assembly results for Bacillus
From: Parallelized short read assembly of large genomes using de Bruijn graphs
PASHA | Velvet | ABySS | SOAPdenovo | |
|---|---|---|---|---|
no. of scaffolds | 20 | 80 | 66 | 98 |
NG50 | 1,435,675 | 670,481 | 424,309 | 487,364 |
NG80 | 182,534 | 117,643 | 124,700 | 96,291 |
max | 2,044,786 | 919,263 | 890,628 | 918,694 |
mean | 208,124 | 52,046 | 67,457 | 42,399 |
genome coverage | 92.27% | 98.69% | 97.92% | 97.60% |
incorrect contigs (mean) | 5(61,643) | 1(44,055) | 1(70,485) | 2(22,680) |
time (in seconds) | 332 | 433 | 747 | 467 |