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Table 2 Assembly results for Bacillus

From: Parallelized short read assembly of large genomes using de Bruijn graphs

  PASHA Velvet ABySS SOAPdenovo
no. of scaffolds 20 80 66 98
NG50 1,435,675 670,481 424,309 487,364
NG80 182,534 117,643 124,700 96,291
max 2,044,786 919,263 890,628 918,694
mean 208,124 52,046 67,457 42,399
genome coverage 92.27% 98.69% 97.92% 97.60%
incorrect contigs (mean) 5(61,643) 1(44,055) 1(70,485) 2(22,680)
time (in seconds) 332 433 747 467
  1. PASHA uses the parameters "k = 29", Velvet uses "k = 29, -exp_cov = auto, -cov_cutoff = auto", ABySS uses "k = 29, n = 10" and SOAPdenvo uses "k = 23, insert_length = 160".