Table 7 Runtime of PASHA and utilized compute resources for different stages
From: Parallelized short read assembly of large genomes using de Bruijn graphs
Stages | Time (h) | No. of CPUs |
|---|---|---|
k-mer generation and distribution | 0.7 | 32 |
de Bruijn graph construction and simplification | 3.1 | 32 |
bubble merging and contig generation | 11.6 | 8 |
scaffolding | 5.9 | 8 |
overall | 21.3 | N/A |