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Table 4 Predicted yeast gene regulatory relationships that are annotated in BIND

From: Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data

BN with prior knowledge

HTA1→HHT1

FUS1→FAR1

FKH2→CLB2

GAS1→SWI4

SWI5→FKH1

DPB3→CDC45

DPB2→DPB3

CLN2→CLN3

ASF1→HHF1

GAS1→KRE6

CLN3→CLB6

CDC14→SIC1

SWI4→MBP1

MSH6→POL30

CLB6→CLN1

SWI4→CHS3

KAR3→NUM1

HHF1→HHT1

MOB1→DBF2

RFA1→RFA3

CLB1→CLB3

CLN1→CLN3

CDC45→CDC6

CLB1→CLB5

HHF1→HTB2

HPR5→RAD54

  

BN Without prior knowledge

HTA1→HHT1

FUS1→FAR1

FKH2→CLB2

GAS1→SWI4

SWI5→FKH1

DPB3→CDC45

DPB2→DPB3

CLN3→CLN2

DBF4→CDC5

CDC8→CIK1

CDC6→CDC45

CLB3→CDC6

SIC1→CDC14

   
  1. Relationships in bold font are predicted both with and without prior knowledge.
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BMC Bioinformatics

ISSN: 1471-2105

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