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Table 5 Predicted yeast gene regulatory relationships that are confirmed by ChIP-chip

From: Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data

BN with prior knowledge

FKH2→HHF1

FKH2→CLB2

SWI6→CLN1

FKH2→HHT1

SWI5→FKH1

SWI6→HO

SWI6→POL30

SWI4→MFA2

FKH1→SWE1

FKH2→CDC6

FKH2→SWI4

SWI4→PSA1

SWI6→HHT1

SWI5→ASH1

SWI6→CLN2

FKH2→SWE1

FKH2→HPR5

SWI6→RAD54

FKH1→RAD51

SWI6→HHF1

SWI6→AGA1

SWI4→AGA1

SWI4→MBP1

 

BN without prior knowledge

SWI6→POL30

SWI6→CLN1

FKH2→HHT1

SWI5→FKH1

FKH2→HHF1

SWI4→MFA2

SWI6→HO

FKH2→CLB2

SWI4→TIR1

FKH1→CDC6

FKH1→CDC20

 
  1. Relationships in bold font are predicted both with and without prior knowledge.