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Table 1 CEXlist test set

From: Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns

APLP1 Amyloid beta (A4) precursor-like protein 1
C6orf62 HBV X-transactivated gene 12 protein
C9orf3 aminopeptidase O
CLK3 CDC-like kinase 3
DEFA3 Defensin, alpha 3, neutrophil-specific
DUSP12 Dual specificity phosphatase 12
EEF1D Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
FSHR Follicle stimulating hormone receptor
MNT MAX binding protein
MRGPRF MAS-related GPR, member F
SH3D19 SH3 domain protein D19
TRIM61 Putative tripartite motif-containing protein 61
C1orf216 chromosome 1 open reading frame 216
C2orf67 chromosome 2 open reading frame 67
OR51Q1 Olfactory receptor, family 51, subfamily Q, member 1
CCDC64B Coiled-coil domain-containing protein 64B
SLC9A3R2 solute carrier family 9 isoform 3 regulator 2
SPG7 Spastic paraplegia protein 7
WISP2 WNT1 inducible signaling pathway protein 2
SNRPD2 Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2)
ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha)
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
AURKA Aurora kinase A
AURKB Aurora kinase B
AURKC Aurora kinase C
ACTA1 Actin, alpha 1, skeletal muscle
ALB Albumin
ALDOA aldolase A, fructose-bisphosphate
DES Desmin
LRRTM1 Leucine rich repeat transmembrane neuronal 1
  1. Twenty genes (lane 1 to 20) were randomly selected from the cisRED database. Eleven genes (lane 21 to 31) with known functions were arbitrarily added to complete the random selection and used as internal controls for gene annotation analyses.