Skip to main content

Table 2 Training vs. testing groups: decoy discrimination test

From: LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates

 

Total sets

RB1

RB10

RMSDdecoy

Zdecoy

CCdecoy

FEdecoy

log(PB1)

log(PB10)

Training group

154

172.0

39.2

3.75

0.829

0.461

29.9

-0.773

-1.491

Testing group

77

154.8

5.6

3.51

0.938

0.505

31.4

-0.864

-1.640

  1. Comparison of LoCo performance for decoy discrimination on both the training and testing groups of decoy sets is shown. Again, results are roughly comparable, though the testing group did somewhat better overall. All measures are averages over every decoy set in the group. Definitions of measures used are provided in the Performance Measures subsection at the end of Methods. In summary, lower scores are better for RB1, RB10, RMSDdecoy, log(PB1) and log(PB10); higher scores are better for Zdecoy, CCdecoy and FEdecoy.