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Figure 4 | BMC Bioinformatics

Figure 4

From: Quantification of protein group coherence and pathway assignment using functional association

Figure 4

Relationship of CAS and PAS with the semantic similarity scores. A, CAS vs. semantic similarity for MF pairs (correlation coefficient: r = 0.5037); B, CAS vs. semantic similarity for BP pairs (r = 0.3450); C, CAS vs. semantic similarity for CC pairs (r = 0.4202); D, PAS vs. semantic similarity for MF pairs (r = 0.3023); E, PAS vs. semantic similarity for BP pairs (r = 0.1711); F, PAS vs. semantic similarity for CC pairs (r = 0.2613). The GO term pairs used in these plots are the same as the one used in Figure 3 (29,474 pairs). The semantic similarity has been computed using Eqn. 10. Since semantic similarity describes relationship between the terms of the same GO domain, the plots only include GO term pairs from the same domain (646 MF pairs, 17,731 BP pairs and 492 CC pairs).

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