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Table 3 Examples of concurrent GO terms based on PAS

From: Quantification of protein group coherence and pathway assignment using functional association

GO ID

Description

Domain

Concurrent GO terms

Description

Domain

PAS

GO:0004461

lactose synthase activity

MF

GO:0003945

N-acetyllactosamine synthase activity

MF

5.0101

   

GO:0008378

galactosyltransferase activity

MF

0.7727

   

GO:0003831

beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity

MF

0.7642

   

GO:0005794

Golgi apparatus

CC

0.0082

   

GO:0009312

oligosaccharide biosynthetic process

BP

0.0075

GO:0004842

ubiquitin-protein ligase activity

MF

GO:0019787

small conjugating protein ligase activity

MF

0.3263

   

GO:0051438

regulation of ubiquitin-protein ligase activity

MF

0.3216

   

GO:0016931

vasopressin activated calcium mobilizing receptor activity

MF

0.3212

   

GO:0034450

ubiquitin-ubiquitin ligase activity

MF

0.3212

   

GO:0042296

ISG15 ligase activity

MF

0.3212

GO:0034755

iron ion transmembrane transport

BP

GO:0034759

regulation of iron ion transmembrane transport

BP

13.0302

   

GO:0005381

iron ion transmembrane transporter activity

MF

12.4638

   

GO:0015087

cobalt ion transmembrane transporter activity

MF

3.2576

   

GO:0070826

paraferritin complex

CC

2.6061

   

GO:0070574

cadmium ion transmembrane transport

BP

1.3573

GO:0070637

pyridine nucleoside metabolic process

BP

GO:0070638

pyridine nucleoside catabolic process

BP

0.7536

   

GO:0034356

NAD biosynthesis via nicotinamide riboside salvage pathway

BP

0.3015

   

GO:0000816

nicotinamide riboside kinase activity

MF

0.2826

   

GO:0006738

nicotinamide riboside catabolic process

BP

0.2029

   

GO:0046495

nicotinamide riboside metabolic process

BP

0.1932

GO:0005833

hemoglobin complex

CC

GO:0031721

hemoglobin alpha binding

MF

0.0363

   

GO:0031722

hemoglobin beta binding

MF

0.0308

   

GO:0030492

hemoglobin binding

MF

0.0271

   

GO:0020027

hemoglobin metabolic process

BP

0.0158

   

GO:0020037

heme binding

MF

0.0083

  1. For the five GO terms in the left column, top five GO terms with the largest PAS score are listed. PAS based concurrent terms are those which are associated frequently in the PubMed abstracts.