Table 1 Validation across microarray platforms of Mulcom, Limma and SAM tests
From: Mulcom: a multiple comparison statistical test for microarray data in Bioconductor
Mulcom | Limma | SAM | ||
|---|---|---|---|---|
HGF 1 h | Significant genes in Affy | 867 | 672 | 723 |
Validated in Illumina | 150 | 0 | 48 | |
HGF 6 h | Significant genes in Affy | 681 | 518 | 561 |
Validated in Illumina | 317 | 237 | 100 | |
HGF 24 h | Significant genes in Affy | 4 | 0 | 82 |
Validated in Illumina | 1 | 0 | 1 | |
ITGB4 +/- | Significant genes in Affy | 26 | 6 | 75 |
Validated in Illumina | 1 | 1 | 0 | |
Total | Significant genes in Affy | 1249 | 956 | 1006 |
Validated in Illumina | 487 | 246 | 151 | |
True positive rate | 39% | 26% | 15% |