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Figure 1 | BMC Bioinformatics

Figure 1

From: Biblio-MetReS: A bibliometric network reconstruction application and server

Figure 1

Workflow of Biblio-MetReS. The user registers, logs in (Panel 1) and selects an organism (Panel 2). Once selected, the program either loads the full list of genes from which the user will select the genes to analyze (Panel 3) or allows the user to directly insert the genes s/he wants to analyze (Panel 2.1). Then, the user must select the databases and web searchers s/he wants to use (Panel 3). The program then starts the search and when finished, it generates a series of outputs for the results. First, the list of documents that was analyzed is shown, together with links to the document and to the list of genes fount in each document (Panel 4A). Second, a list of all genes that were found is given (Panel 4B). Each gene is linked to its KEGG webpage, where the gene is associated with other databases and biological pathways. Third, a tabular analysis of gene co-occurrence is shown (Panel 4C). This table contains access to information about the documents and sentences where gene pairs are found (Panels 4C.I and 4C.II). Finally, two editable graphs containing the sentence (Panel 5 A) and paragraph (Panel 5 B) co-occurrence networks are shown.

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