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Table 1 Recall of different methods at different rank levels, for diseases with at least one known disease gene.

From: ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples

  top 1 top 10 top 1% top 5% top 10%
MKL1class 11.5 25.3 41.1 52.8 59.9
ProDiGe1 12.3 27.8 49.2 61.9 71.2
ProDiGe2 0.1 0.7 17.8 51.2 66.9
ProDiGe3 1.9 11.4 38.6 64.0 74.2
ProDiGe4 3.1 14.6 43.4 68.9 78.4
PRINCE 1.5 6.8 37.3 57.1 65.4
  1. The recall at rank level k is the percentage of disease genes that were correctly ranked in the top k candidate genes in the LOOCV procedure, where the number of candidate genes is near 19540. Top 1 and top 10 (first two columns) correspond respectively to the recall at the first and first ten genes among 19540, while top X% (last three columns) refer to the recall at the first X% genes among 19540.