Predicted nucleosomes. Example of predicted nucleosomes from Arabidopsis thaliana dataset with b = 128 and s = 17. Vertical bars indicate read positions on forward (top) and reverse strand (bottom). The nucleosome score computed by ChIPseqR is shown as blue line. Blue ellipses indicate nucleosomes predicted by ChIPseqR. GeneTrack predictions are shown as red ellipses for comparison. The nucleosome shown in dark blue corresponds to a high confidence prediction (FDR < 0.05). Lighter shades of blue indicate lower confidence predictions.