Figure 2
From: Phamerator: a bioinformatic tool for comparative bacteriophage genomics
Effects of CLUSTALW and BLASTP thresholds on pham assembly. A. Changes in the total number of phams, number of orphams, and maximum pham size as a function of CLUSTALW threshold (percent identity). B. Changes in the percent of total phams that are orphams and mean pham size as a function of CLUSTALW threshold (percent identity). C. Changes in the total number of phams, number of orphams, and maximum pham size as a function of BLASTP threshold (E-value), superimposed over a CLUSTALW cutoff value of 32.5% identity. D. Change in the mean pham size as a function of BLASTP threshold (E-value), superimposed over a CLUSTALW cutoff value of 32.5% identity.