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Table 2 Run time

From: Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements

Data set BHC-SE BHC-SE mixture model Genes Time points Replicates
S. cerevisiae 1 6 m 3 s 38 m 49 s 169 17 N/A
S. cerevisiae 2 24 m 8 s 5 h 48 m 440 15 2
H. sapiens 19 s 49 s 58 10 44
E. coli 7 m 6 s 34 m 39 s 200 13 6
  1. Run times of data sets for BHC-SE and BHC-SE with a mixture model likelihood in hours (h), minutes (m) and seconds (s) on a 2.40 GHz Intel Xeon CPU. The run times for BHC-C were very similar to BHC-SE. Using replicate information did not increase the run times. Also shown are the number of genes, time points and replicates for each dataset.