From: PMS5: an efficient exact algorithm for the (ℓ, d)-motif finding problem
Dataset | Best motif found by PMS5 | Matched binding sites at: |
---|---|---|
mus05r | AGAGGAAAAAAAAAAGGAGAG | seq 1: GGAAAAACAAAGGTAATG |
mus07r | GCTGCCCACCCTCTGCAACCC | seq 4: CCCAACACCTGCTGCCTGAGCC |
mus11r | AGGGCGGGGGGCGGAGCGGGG | seq 2: GCCGCCGGGGTGGGGCTGAG |
seq 3: GGGGGGGGGGGCGGGGC | ||
seq 4: GTGGGGGCGGGGCCTT | ||
seq 9: GAACAGGAAGTGAGGCGG | ||
hm03r | AAAAGAAAAAAAAATAAACAA | seq 1: CGGGTGTTATTCAAGCAAAAAAAATAAATAAATACCTATGCAATAC |
seq 2: GGATGTTACACAAGCAAACAAAATAAATATCTGTGCAATAT | ||
seq 3: TGGGTGTTATATGAGCAAACAAAATAAATACCTGTGCAACAT | ||
hm08r | CAGCGTGCAGTCCCCTTCATC | seq 10: TATGGTCATGACGTCTGACAGAGC |
hm19r | CCCCCTTCCACCACCCACAGA | seq 2: CACTTTTAGCTCCTCCCCCCA |
hm20r | CCTCCTTCCTCCCCCTCCCCC | seq 10: TCCTCCCCACCTTCCCCACCCTCCCCACCCTCCCCATAAGCGCCCCTCCCG |
seq 11: GCAAACTCCGCCTCCCCCAA | ||
seq 14: GTCCCTCCTCCTCCCGCCC | ||
hm22r | GGACACGGCAGAGCCTGGGGA | seq 4: GAGGCAGACCACGTGAGAGCCTGGCCAGGCCTTCC |
hm24r | CGCCTGCGCCCCGCCCCGCCC | seq 2: CCCCGCCCCGCGCTCCCC |
hm26r | CCCCCCGCCTCCCGCTCCCAG | seq 3: CCCCGCCTCAGGCTCCCGGGG |
seq 7: CTCAGCCTGCCCCTCCCAGGGATTAAG | ||
seq 8: GCGCCGAGGCGTCCCCGAGGCGC |