Base Density analysis of undifferentiated and differentiated THP-1 cells. Analysis of base density comparing the undifferentiated (red curve) and differentiated (blue curve) cell states. The genes in the HoxA locus are shown aligned above the plot. A pool of one-hundred structures generated by MCMC5C were used for each state. The base density measure was calculated with a sphere of radius one (1.0) every tenth base. The error bars report the standard deviation.