Table 1 Results of SEQUEST & SpectraST for spectra in clustered spectral sets
From: Enhanced peptide quantification using spectral count clustering and cluster abundance
Spectral Set ID | Sample | Sequence | XCorr | RT | precursor ion | precursor intensity | SpectraST |
|---|---|---|---|---|---|---|---|
S366006 | HCC-3 | SIFSAVLDELK | 2.35 | 6096.18 | 1223.4 | 25828.2 | 1 |
| Â | Normal-1 | SIFSAVLDELK | 2.38 | 6144.00 | 1222.6 | 12823.4 | 1 |
| Â | Normal-1 | SIFSAVLDELK | 2.12 | 6197.20 | 1224.2 | 385800.0 | 1 |
| Â | Normal-1 | SIFSAVLDELK | 2.30 | 6248.89 | 1224.2 | 145284.0 | 1 |
| Â | Normal-2 | SIFSAVLDELK | 1.99 | 6278.55 | 1223.4 | 6218.5 | 1 |
| Â | Normal-2 | SIFSAVLDELK | 2.35 | 6341.52 | 1222.3 | 14101.8 | 1 |
| Â | Normal-2 | SIFSAVLDELK | 1.98 | 6441.91 | 1223.1 | 2800.2 | 1 |
| Â | Normal-3 | SIFSAVLDELK | 2.56 | 6149.98 | 1224.4 | 421560.0 | 1 |
| Â | Normal-3 | SIFSAVLDELK | 2.37 | 6154.65 | 1222.3 | 23456.6 | 1 |
S1157004 | Normal-1 | VDFPQDQLTALTGR | 2.77 | 3724.74 | 1565.1 | 106099.0 | 1 |
| Â | Normal-2 | VDFPQDQLTALTGR | 2.33 | 3647.59 | 1562.4 | 143286.0 | 1 |
| Â | Normal-1 | VDFPQDQLTALTGR | 2.46 | 3779.98 | 1562.2 | 75465.1 | 1 |
| Â | HCC-3 | VDFPQDQLTALTGR | 2.10 | 3854.18 | 1562.3 | 34323.8 | 1 |
| Â | Normal-2 | VDFPQDQLTALTGR | 2.07 | 3695.20 | 1562.7 | 159244.0 | 1 |
| Â | Normal-3 | VDFPQDQLTALTGR | 2.07 | 3825.73 | 1562.4 | 69159.3 | 1 |
| Â | Normal-3 | VDFPQDQLTALTGR | 2.24 | 3775.23 | 1562.9 | 71196.3 | 1 |
| Â | HCC-1 | VDFPQDQLTALTGR | 2.02 | 3930.66 | 1562.2 | 25175.7 | 1 |
| Â | HCC-2 | VDFPQDQLTALTGR | 1.95 | 3977.91 | 1562.2 | 12849.6 | 1 |
| Â | Normal-2 | M#WLSSMCSMRSAR | 1.29 | 3629.94 | 1564.7 | 86816.8 | 1 |
| Â | HCC-1 | VDFPQDQLTALTGR | 2.20 | 3907.36 | 1564.2 | 19403.5 | 1 |
S65002 | HCC-1 | EILVGDVGQTVDDPYATFVK | 3.81 | 4619.64 | 1084.4 | 21166.7 | 1 |
| Â | HCC-3 | EILVGDVGQTVDDPYATFVK | 3.70 | 4573.01 | 1084.7 | 46939.4 | X |
| Â | HCC-3 | EILVGDVGQTVDDPYATFVK | 2.32 | 4579.55 | 1083.5 | 22077.0 | 1 |
| Â | Normal-1 | EILVGDVGQTVDDPYATFVK | 2.87 | 4516.45 | 1084.0 | 26598.5 | 1 |
| Â | Normal-2 | EILVGDVGQTVDDPYATFVK | 4.08 | 4461.41 | 1084.5 | 19416.7 | X |
| Â | Normal-2 | EILVGDVGQTVDDPYATFVK | 3.49 | 4514.74 | 1084.7 | 91100.7 | X |
| Â | Normal-3 | EILVGDVGQTVDDPYATFVK | 3.37 | 4548.32 | 1084.5 | 23254.4 | 1 |