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Table 2 Correlation matrix and the number of shared spectral clusters between different samples and within replicated samples

From: Enhanced peptide quantification using spectral count clustering and cluster abundance

 

HCC1

HCC2

HCC3

Normal1

Normal2

Normal3

HCC1

1.0000a

(4,319)b

0.8315

(2,117)c

0.8125

(2,142)c

0.1549

(1,108)c

0.0828

(929)c

0.1088

(1,022)c

HCC2

 

1.0000

(4,144)b

0.8048

(2,032)c

0.1232

(1,025)c

0.0654

(894)c

0.0899

(947)c

HCC3

  

1.0000

(4,461)b

0.1394

(1,144)c

0.0654

(947)c

0.0911

(1,061)c

Normal1

   

1.0000

(4,710)b

0.7178

(2,280)c

0.7449

(2,286)c

Normal2

    

1.0000

(4,863)b

0.7302

(2,128)c

Normal3

     

1.0000

(4,560)b

  1. a: correlation coefficient, b: # of spectral clusters, and c: # of shared spectral clusters,
  2. This table shows correlation matrix with number of spectra in same cluster between different samples and within replicated samples. The number of spectra in the same cluster within replicated samples showed high correlations, while the number of spectra between different samples showed weak correlations.