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Table 1 Proteins identified in Methanohalophilus mahii DSM 5219 as PPP's top hits with perfect agreement (28 of 28 genomes) to the methanogenesis phylogenetic profile, showing BLAST E-values flanking the boundaries selected by PPP.

From: ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process

GI number Last True First False Protein Functional Assignment
294495086 1e-24 4e-23 paralog of MtrA
294495087 5e-52 2e-46 paralog of MtrH
294495289 5e-170 2.5 methyl-coenzyme M reductase, alpha subunit
294495290 8e-68 0.11 methyl-coenzyme M reductase, gamma subunit
294495291 5e-35 (none) methyl-coenzyme M reductase operon protein C
294495292 7e-17 0.63 methyl-coenzyme M reductase operon protein D
294495293 2e-130 2.4 methyl-coenzyme M reductase, beta subunit
294495294 5e-94 3e-07 methanogenesis marker 10 radical SAM protein
294495889 0.38 0.64 protein of unknown function DUF2098
294495924 7e-131 6e-130 formylmethanofuran dehydrogenase, subunit A
294495926 6e-08 1e-07 formylmethanofuran dehydrogenase, subunit D
294496062 2e-73 4e-09 methanogenesis marker 13 metalloprotein
294496216 9e-68 3e-55 methanogenesis marker 2 protein
294496423 5e-48 (none) tetrahydromethanopterin S-methyltransferase, MtrE
294496424 3e-25 (none) tetrahydromethanopterin S-methyltransferase, MtrD
294496425 1e-18 0.78 tetrahydromethanopterin S-methyltransferase, MtrC
294496426 0.003 0.48 tetrahydromethanopterin S-methyltransferase, MtrB
294496427 2e-37 8e-19 tetrahydromethanopterin S-methyltransferase, MtrA
294496429 4e-04 0.40 tetrahydromethanopterin S-methyltransferase, MtrG
294496430 8e-76 2e-48 tetrahydromethanopterin S-methyltransferase, MtrH
294496497 9e-52 0.45 methanogenesis marker 7 protein
294496498 0.011 0.36 methanogenesis marker 17 protein
294496499 1e-115 9e-31 methanogenesis marker 15 protein
294496500 3e-34 1.5 methanogenesis marker 5 protein
294496501 2e-14 3.0 methanogenesis marker 6 protein
294496502 2e-45 1.8 methanogenesis marker 3 protein
294496503 1e-144 4e-39 methyl coenzyme M reductase system, AtwA protein
294496608 2e-43 9e-31 paralog of AtwA
294496619 2e-72 0.031 methanogenesis marker 14 protein