Skip to main content

Table 1 Proteins identified in Methanohalophilus mahii DSM 5219 as PPP's top hits with perfect agreement (28 of 28 genomes) to the methanogenesis phylogenetic profile, showing BLAST E-values flanking the boundaries selected by PPP.

From: ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process

GI number

Last True

First False

Protein Functional Assignment

294495086

1e-24

4e-23

paralog of MtrA

294495087

5e-52

2e-46

paralog of MtrH

294495289

5e-170

2.5

methyl-coenzyme M reductase, alpha subunit

294495290

8e-68

0.11

methyl-coenzyme M reductase, gamma subunit

294495291

5e-35

(none)

methyl-coenzyme M reductase operon protein C

294495292

7e-17

0.63

methyl-coenzyme M reductase operon protein D

294495293

2e-130

2.4

methyl-coenzyme M reductase, beta subunit

294495294

5e-94

3e-07

methanogenesis marker 10 radical SAM protein

294495889

0.38

0.64

protein of unknown function DUF2098

294495924

7e-131

6e-130

formylmethanofuran dehydrogenase, subunit A

294495926

6e-08

1e-07

formylmethanofuran dehydrogenase, subunit D

294496062

2e-73

4e-09

methanogenesis marker 13 metalloprotein

294496216

9e-68

3e-55

methanogenesis marker 2 protein

294496423

5e-48

(none)

tetrahydromethanopterin S-methyltransferase, MtrE

294496424

3e-25

(none)

tetrahydromethanopterin S-methyltransferase, MtrD

294496425

1e-18

0.78

tetrahydromethanopterin S-methyltransferase, MtrC

294496426

0.003

0.48

tetrahydromethanopterin S-methyltransferase, MtrB

294496427

2e-37

8e-19

tetrahydromethanopterin S-methyltransferase, MtrA

294496429

4e-04

0.40

tetrahydromethanopterin S-methyltransferase, MtrG

294496430

8e-76

2e-48

tetrahydromethanopterin S-methyltransferase, MtrH

294496497

9e-52

0.45

methanogenesis marker 7 protein

294496498

0.011

0.36

methanogenesis marker 17 protein

294496499

1e-115

9e-31

methanogenesis marker 15 protein

294496500

3e-34

1.5

methanogenesis marker 5 protein

294496501

2e-14

3.0

methanogenesis marker 6 protein

294496502

2e-45

1.8

methanogenesis marker 3 protein

294496503

1e-144

4e-39

methyl coenzyme M reductase system, AtwA protein

294496608

2e-43

9e-31

paralog of AtwA

294496619

2e-72

0.031

methanogenesis marker 14 protein