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Table 2 Corresponding feature identification accuracy v.s. PeptideProphet probability threshold

From: SCFIA: a statistical corresponding feature identification algorithm for LC/MS

Testing set of Q1 and Q2 from Group1
PeptideProphet probability No. of peptides tested Accuracy of SCFIA
95% 1425 94.18%
98% 1252 95.13%
99.9% 210 97.62%
99.99% 23 100%