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Table 2 Performance comparison on BaCelLoc protein dataset

From: Gene ontology based transfer learning for protein subcellular localization

Subcellular Location Size Cross validation Independent test
    MultiLoc-GO GO-TLM Size
(train/test)
MultiLoc-GO GO-TLM
    - SP SE MCC   SP SE MCC SP SE MCC
Plant
(491)
Nucleus 121 - 0.9516 0.9752 0.9514 60/61 0.91 0.90 0.77 1.0000 0.6500 0.7252
  Cytoplasm 58 - 0.9434 0.8772 0.8986 52/6 0.41 0.94 0.38 0.7500 1.0000 0.8590
  Extracellular 41 - 0.9762 1.0000 0.9869 35/6 0.83 0.95 0.58 1.0000 0.6667 0.8100
  Mitochondria 67 - 0.9552 0.9552 0.9482 57/10 0.67 0.96 0.51 0.6429 0.9000 0.7386
  Chloroplast 204 - 0.9951 0.9951 0.9916 158/46 0.77 0.94 0.72 0.7302 1.0000 0.7777
  Overall Accuracy 83.70% 97.14% 76.00% 81.25%
Fungi
(1198)
Nucleus 711 - 0.9641 0.9817 0.9354 589/122 0.63 0.79 0.36 1.0000 0.7213 0.7246
  Cytoplasm 211 - 0.9880 0.9318 0.9564 181/30 0.54 0.78 0.27 0.483 9 1.0000 0.6311
  Extracellular 88 - 0.9130 0.8957 0.8849 72/16 0.78 0.98 0.60 1.0000 0.9375 0.9653
  Mitochondria 188 - 0.9780 0.9570 0.9616 177/11 0.68 0.94 0.62 0.7857 1.0000 0.8786
  Overall Accuracy 90.10% 95.90% 60.00% 80.45%
Animal
(2597)
Nucleus 1166 - 0.9646 0.9854 0.9551 803/363 0.62 0.93 0.57 0.7965 0.9945 0.7876
  Cytoplasm 439 - 0.9402 0.8952 0.9017 302/137 0.72 0.82 0.43 0.7095 0.9270 0.7648
  Extracellular 804 - 0.9900 0.9900 0.9856 632/172 0.97 0.97 0.89 1.0000 0.2326 0.4406
  Mitochondria 188 - 0.9783 0.9574 0.9653 153/35 0.89 0.97 0.81 0.9714 0.9714 0.9699
  Overall Accuracy 85.70% 96.85% 73.00% 79.46%