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Table 2 Predictive powers for the various combinations of feature values in the LT2 validation

From: Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria

 

AUC

RANKavg

# of TPs in top 20

ALL

0.993

40.5

9.7

ALL-Nterminal Stability

0.989

57.9

7.6

ALL-CAI

0.991

48.4

8.9

ALL-ProtParam

0.989

56.7

7.9

ALL-dN/dS

0.992

43.9

9.1

  1. Average AUC values are shown for the four sets of validation models. The RANKavg column shows the average rank of known effectors for 10 validation sets. The average number of true positives from 20 known testing examples in the top 20 is shown in the right column.
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BMC Bioinformatics

ISSN: 1471-2105

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