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Table 1 Modules available in SIGNATURES

From: SIGNATURE: A workbench for gene expression signature analysis

Module Use Case Publication
ScoreSignatures To predict activation of pathways in gene expression data.  
CreateSignature To create a new gene expression signature using a training set. 1
BFRMNormalize To remove technical variation across one or more gene expression data sets. 2
FindSubtypes To find subtypes within a gene expression data set. 3
PredictSubtypes To assign a subtype to gene expression data using a previously developed model. 3
BFRMFactor To dissect a gene expression data set into modules. 4
BFRMProject To score the modules in gene expression data using a previously developed model. 5
  1. SIGNATURE includes modules that perform a range of analyses on gene expression data 1[24]2[31]3[25]4[32]5[33].