Table 1 Physicochemical properties with feature usage larger than 50%
From: POPISK: T-cell reactivity prediction using support vector machines and string kernels
Usage | AAindex ID | Physicochemical properties |
|---|---|---|
100% | MEEJ800102 | Retention coefficient in HPLC, pH2.1 |
91% | WOLS870102 | Principal property value z2 |
87% | CASG920101 | Hydrophobicity scale from native proteins |
84% | NAKH900110 | Normalized composition of membrane proteins |
81% | FASG760105 | pK-C |
79% | FAUJ880105 | STERIMOL minimum width of the side chain |
76% | CHAM830107 | A parameter of charge transfer capability |
61% | QIAN880127 | Weights for coil at the window position of -6 |
59% | RACS820108 | Average relative fractional occurrence in AR (i-1) |
58% | DIGM050101 | Hydrostatic pressure asymmetry index, PAI |
56% | TANS770109 | Normalized frequency of coil |