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Table 2 Prediction results of POPISK

From: POPISK: T-cell reactivity prediction using support vector machines and string kernels

PDB ID Sequence Source POPISK Score Experimental immunogenicity*
1qrn LLFGYAVYV Modified Tax protein of HTLV-1 -0.26 -
1qse LLFGYPRYV Modified Tax protein of HTLV-1 -0.14 +
1qsf LLFGYPVAV Modified Tax protein of HTLV-1 -0.07 -
1ao7 LLFGYPVYV Tax protein of HTLV-1 -0.04 +
1oga GILGFVFTL Matrix protein of influenza 1.10 +
2f53 SLLMWITQC Cancer/testis antigen 1B 1.11 +
2bnq SLLMWITQV Modified Cancer/testis antigen 1B 1.36 +
  1. *+: immunogenic peptide; -: non-immunogenic peptide