From: From hybridization theory to microarray data analysis: performance evaluation
Summary | Data | Diff. expr. | m2 m8 | m3 m7 | m4 m6 | m1 m6 | m4 m9 | m1 m4 | m6 m9 | m1 m5a | m5a m9 | m1 m5b | m5b m9 | m1 m5c | m5c m9 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Average difference | Raw | Student | 0.73 | 0.69 | 0.57 | 0.81 | 0.81 | 0.54 | 0.51 | 0.62 | 0.67 | 0.72 | 0.75 | 0.69 | 0.68 |
 |  | Win. t | 0.83 | 0.83 | 0.72 | 0.87 | 0.90 | 0.60 | 0.65 | 0.71 | 0.77 | 0.79 | 0.85 | 0.76 | 0.80 |
 |  | Reg. t | 0.75 | 0.81 | 0.67 | 0.84 | 0.89 | 0.56 | 0.61 | 0.72 | 0.72 | 0.78 | 0.82 | 0.76 | 0.77 |
 | Scaled | Student | 0.72 | 0.69 | 0.56 | 0.76 | 0.80 | 0.48 | 0.57 | 0.63 | 0.72 | 0.63 | 0.73 | 0.66 | 0.74 |
 |  | Win. t | 0.85 | 0.83 | 0.73 | 0.86 | 0.89 | 0.56 | 0.68 | 0.73 | 0.81 | 0.74 | 0.83 | 0.74 | 0.83 |
 |  | Reg. t | 0.81 | 0.79 | 0.67 | 0.83 | 0.87 | 0.49 | 0.63 | 0.68 | 0.76 | 0.69 | 0.79 | 0.69 | 0.78 |
Li-Wong MBEI | Raw | Student | 0.71 | 0.69 | 0.57 | 0.78 | 0.77 | 0.53 | 0.45 | 0.61 | 0.68 | 0.69 | 0.74 | 0.69 | 0.67 |
 |  | Win. t | 0.81 | 0.82 | 0.72 | 0.84 | 0.86 | 0.58 | 0.62 | 0.69 | 0.77 | 0.77 | 0.83 | 0.75 | 0.79 |
 |  | Reg. t | 0.73 | 0.79 | 0.67 | 0.81 | 0.84 | 0.54 | 0.58 | 0.68 | 0.74 | 0.74 | 0.81 | 0.73 | 0.77 |
 | Scaled | Student | 0.68 | 0.65 | 0.52 | 0.68 | 0.73 | 0.43 | 0.54 | 0.57 | 0.65 | 0.54 | 0.67 | 0.60 | 0.67 |
 |  | Win. t | 0.81 | 0.79 | 0.70 | 0.80 | 0.83 | 0.51 | 0.66 | 0.66 | 0.76 | 0.67 | 0.79 | 0.67 | 0.77 |
 |  | Reg. t | 0.77 | 0.75 | 0.63 | 0.76 | 0.80 | 0.46 | 0.61 | 0.62 | 0.71 | 0.62 | 0.75 | 0.63 | 0.71 |
1-Step Tukey-Biweight | Raw | Student | 0.78 | 0.74 | 0.64 | 0.85 | 0.84 | 0.61 | 0.51 | 0.66 | 0.71 | 0.77 | 0.79 | 0.76 | 0.71 |
 |  | Win. t | 0.86 | 0.86 | 0.77 | 0.90 | 0.92 | 0.65 | 0.68 | 0.73 | 0.80 | 0.83 | 0.89 | 0.80 | 0.83 |
 |  | Reg. t | 0.78 | 0.85 | 0.74 | 0.87 | 0.91 | 0.62 | 0.65 | 0.74 | 0.77 | 0.82 | 0.87 | 0.80 | 0.81 |
 | Scaled | Student | 0.76 | 0.73 | 0.61 | 0.78 | 0.83 | 0.54 | 0.63 | 0.65 | 0.74 | 0.66 | 0.76 | 0.71 | 0.77 |
 |  | Win. t | 0.87 | 0.86 | 0.78 | 0.89 | 0.92 | 0.61 | 0.74 | 0.74 | 0.83 | 0.77 | 0.86 | 0.77 | 0.85 |
 |  | Reg. t | 0.86 | 0.84 | 0.74 | 0.87 | 0.90 | 0.55 | 0.69 | 0.70 | 0.80 | 0.73 | 0.83 | 0.74 | 0.82 |
Median | Raw | Student | 0.73 | 0.69 | 0.57 | 0.81 | 0.81 | 0.54 | 0.51 | 0.62 | 0.67 | 0.72 | 0.76 | 0.69 | 0.68 |
 |  | Win. t | 0.83 | 0.83 | 0.72 | 0.87 | 0.90 | 0.59 | 0.65 | 0.70 | 0.77 | 0.79 | 0.85 | 0.75 | 0.80 |
 |  | Reg. t | 0.76 | 0.81 | 0.68 | 0.85 | 0.89 | 0.55 | 0.61 | 0.70 | 0.74 | 0.77 | 0.83 | 0.75 | 0.78 |
 | Scaled | Student | 0.72 | 0.69 | 0.56 | 0.76 | 0.80 | 0.48 | 0.57 | 0.63 | 0.72 | 0.63 | 0.73 | 0.66 | 0.74 |
 |  | Win. t | 0.85 | 0.83 | 0.73 | 0.86 | 0.90 | 0.55 | 0.69 | 0.72 | 0.81 | 0.74 | 0.84 | 0.74 | 0.83 |
 |  | Reg. t | 0.82 | 0.80 | 0.68 | 0.83 | 0.87 | 0.50 | 0.64 | 0.68 | 0.77 | 0.70 | 0.80 | 0.70 | 0.79 |
Median-polish | Raw | Student | 0.85 | 0.81 | 0.73 | 0.88 | 0.88 | 0.70 | 0.52 | 0.70 | 0.76 | 0.82 | 0.83 | 0.80 | 0.74 |
 |  | Win. t | 0.91 | 0.90 | 0.85 | 0.92 | 0.94 | 0.73 | 0.70 | 0.75 | 0.83 | 0.87 | 0.91 | 0.82 | 0.86 |
 |  | Reg. t | 0.90 | 0.89 | 0.86 | 0.93 | 0.94 | 0.74 | 0.70 | 0.75 | 0.85 | 0.88 | 0.90 | 0.83 | 0.87 |
 | Scaled | Student | 0.80 | 0.77 | 0.66 | 0.79 | 0.83 | 0.56 | 0.65 | 0.65 | 0.73 | 0.66 | 0.76 | 0.71 | 0.76 |
 |  | Win. t | 0.91 | 0.90 | 0.85 | 0.90 | 0.92 | 0.67 | 0.78 | 0.76 | 0.84 | 0.80 | 0.87 | 0.80 | 0.87 |
 |  | Reg. t | 0.93 | 0.91 | 0.86 | 0.91 | 0.94 | 0.65 | 0.80 | 0.76 | 0.86 | 0.79 | 0.89 | 0.81 | 0.90 |