From: From hybridization theory to microarray data analysis: performance evaluation
Summary | Data | Diff. expr. | m1 m9 | m2 m8 | m3 m7 | m4 m6 | m1 m6 | m4 m9 | m1 m4 | m6 m9 | m1 m5a | m5a m9 | m1 m5b | m5b m9 | m1 m5c | m5c m9 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Average difference | Raw | Student | 0.46 | 0.44 | 0.37 | 0.30 | 0.43 | 0.42 | 0.41 | 0.28 | 0.47 | 0.44 | 0.46 | 0.43 | 0.44 | 0.37 |
 |  | Win. t | 0.54 | 0.52 | 0.46 | 0.39 | 0.51 | 0.52 | 0.50 | 0.36 | 0.55 | 0.53 | 0.55 | 0.52 | 0.53 | 0.48 |
 |  | Reg. t | 0.47 | 0.43 | 0.37 | 0.35 | 0.46 | 0.46 | 0.48 | 0.29 | 0.50 | 0.44 | 0.48 | 0.43 | 0.48 | 0.42 |
 | Scaled | Student | 0.42 | 0.42 | 0.45 | 0.33 | 0.43 | 0.43 | 0.34 | 0.32 | 0.37 | 0.40 | 0.40 | 0.40 | 0.36 | 0.37 |
 |  | Win. t | 0.53 | 0.53 | 0.54 | 0.43 | 0.52 | 0.53 | 0.43 | 0.40 | 0.46 | 0.50 | 0.50 | 0.50 | 0.45 | 0.49 |
 |  | Reg. t | 0.46 | 0.46 | 0.49 | 0.39 | 0.45 | 0.48 | 0.39 | 0.34 | 0.38 | 0.42 | 0.41 | 0.42 | 0.39 | 0.43 |
Li-Wong MBEI | Raw | Student | 0.47 | 0.40 | 0.38 | 0.33 | 0.45 | 0.46 | 0.41 | 0.32 | 0.47 | 0.48 | 0.47 | 0.46 | 0.43 | 0.38 |
 |  | Win. t | 0.52 | 0.49 | 0.44 | 0.42 | 0.50 | 0.53 | 0.49 | 0.38 | 0.53 | 0.56 | 0.53 | 0.54 | 0.50 | 0.50 |
 |  | Reg. t | 0.46 | 0.43 | 0.39 | 0.41 | 0.46 | 0.48 | 0.47 | 0.33 | 0.49 | 0.51 | 0.50 | 0.50 | 0.47 | 0.47 |
 | Scaled | Student | 0.38 | 0.39 | 0.43 | 0.35 | 0.40 | 0.43 | 0.32 | 0.34 | 0.33 | 0.41 | 0.36 | 0.42 | 0.32 | 0.39 |
 |  | Win. t | 0.49 | 0.49 | 0.52 | 0.44 | 0.49 | 0.53 | 0.40 | 0.43 | 0.42 | 0.51 | 0.46 | 0.52 | 0.43 | 0.52 |
 |  | Reg. t | 0.42 | 0.41 | 0.47 | 0.41 | 0.44 | 0.48 | 0.36 | 0.37 | 0.38 | 0.48 | 0.42 | 0.48 | 0.39 | 0.49 |
1-Step Tukey-Biweight | Raw | Student | 0.52 | 0.50 | 0.42 | 0.36 | 0.49 | 0.49 | 0.50 | 0.36 | 0.54 | 0.54 | 0.53 | 0.52 | 0.52 | 0.43 |
 |  | Win. t | 0.57 | 0.56 | 0.48 | 0.44 | 0.55 | 0.57 | 0.57 | 0.42 | 0.61 | 0.61 | 0.60 | 0.59 | 0.58 | 0.54 |
 |  | Reg. t | 0.52 | 0.53 | 0.44 | 0.44 | 0.51 | 0.53 | 0.56 | 0.37 | 0.57 | 0.57 | 0.57 | 0.56 | 0.56 | 0.52 |
 | Scaled | Student | 0.45 | 0.45 | 0.48 | 0.37 | 0.45 | 0.47 | 0.40 | 0.39 | 0.41 | 0.45 | 0.43 | 0.46 | 0.41 | 0.42 |
 |  | Win. t | 0.56 | 0.56 | 0.58 | 0.47 | 0.55 | 0.58 | 0.49 | 0.47 | 0.50 | 0.56 | 0.53 | 0.57 | 0.50 | 0.56 |
 |  | Reg. t | 0.51 | 0.50 | 0.55 | 0.46 | 0.51 | 0.55 | 0.46 | 0.43 | 0.46 | 0.53 | 0.50 | 0.54 | 0.47 | 0.54 |
Median | Raw | Student | 0.46 | 0.45 | 0.38 | 0.30 | 0.43 | 0.43 | 0.40 | 0.29 | 0.47 | 0.45 | 0.46 | 0.44 | 0.44 | 0.37 |
 |  | Win. t | 0.55 | 0.53 | 0.47 | 0.40 | 0.52 | 0.53 | 0.50 | 0.37 | 0.55 | 0.54 | 0.55 | 0.53 | 0.53 | 0.49 |
 |  | Reg. t | 0.49 | 0.49 | 0.42 | 0.39 | 0.48 | 0.49 | 0.48 | 0.31 | 0.52 | 0.49 | 0.52 | 0.48 | 0.49 | 0.46 |
 | Scaled | Student | 0.43 | 0.42 | 0.45 | 0.34 | 0.43 | 0.43 | 0.34 | 0.32 | 0.37 | 0.41 | 0.40 | 0.41 | 0.36 | 0.38 |
 |  | Win. t | 0.54 | 0.54 | 0.54 | 0.43 | 0.53 | 0.54 | 0.42 | 0.41 | 0.46 | 0.51 | 0.50 | 0.52 | 0.45 | 0.50 |
 |  | Reg. t | 0.48 | 0.48 | 0.51 | 0.42 | 0.48 | 0.50 | 0.38 | 0.35 | 0.41 | 0.47 | 0.45 | 0.48 | 0.42 | 0.48 |
Median-polish | Raw | Student | 0.59 | 0.58 | 0.47 | 0.42 | 0.55 | 0.57 | 0.52 | 0.46 | 0.62 | 0.65 | 0.59 | 0.61 | 0.57 | 0.51 |
 |  | Win. t | 0.64 | 0.63 | 0.52 | 0.48 | 0.60 | 0.62 | 0.61 | 0.50 | 0.66 | 0.69 | 0.64 | 0.66 | 0.63 | 0.61 |
 |  | Reg. t | 0.64 | 0.64 | 0.52 | 0.51 | 0.61 | 0.62 | 0.62 | 0.51 | 0.67 | 0.68 | 0.64 | 0.67 | 0.64 | 0.61 |
 | Scaled | Student | 0.53 | 0.54 | 0.55 | 0.43 | 0.53 | 0.54 | 0.40 | 0.45 | 0.43 | 0.52 | 0.46 | 0.54 | 0.44 | 0.49 |
 |  | Win. t | 0.62 | 0.63 | 0.64 | 0.52 | 0.61 | 0.63 | 0.51 | 0.55 | 0.54 | 0.62 | 0.58 | 0.63 | 0.54 | 0.62 |
 |  | Reg. t | 0.62 | 0.62 | 0.64 | 0.55 | 0.62 | 0.64 | 0.53 | 0.56 | 0.55 | 0.64 | 0.59 | 0.65 | 0.55 | 0.64 |