From: From hybridization theory to microarray data analysis: performance evaluation
Method | Data | Diff. expr. | m1 m9 | m2 m8 | m3 m7 | m4 m6 | m1 m6 | m4 m9 | m1 m4 | m6 m9 | m1 m5a | m5a m9 | m1 m5b | m5b m9 | m1 m5c | m5c m9 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MAS 5 1-Step Tukey-Biweight | PM | Student | 0.51 | 0.49 | 0.46 | 0.36 | 0.48 | 0.52 | 0.49 | 0.40 | 0.52 | 0.55 | 0.54 | 0.56 | 0.49 | 0.45 |
 |  | Win. t | 0.60 | 0.57 | 0.54 | 0.46 | 0.56 | 0.62 | 0.59 | 0.48 | 0.61 | 0.63 | 0.63 | 0.64 | 0.58 | 0.58 |
 |  | Reg. t | 0.54 | 0.52 | 0.49 | 0.46 | 0.52 | 0.58 | 0.56 | 0.42 | 0.57 | 0.60 | 0.59 | 0.60 | 0.55 | 0.54 |
 | PM | Student | 0.48 | 0.49 | 0.49 | 0.42 | 0.50 | 0.50 | 0.44 | 0.40 | 0.44 | 0.46 | 0.48 | 0.47 | 0.45 | 0.49 |
 | Norm | Win. t | 0.57 | 0.57 | 0.59 | 0.53 | 0.59 | 0.61 | 0.55 | 0.51 | 0.55 | 0.57 | 0.58 | 0.58 | 0.55 | 0.60 |
 |  | Reg. t | 0.50 | 0.51 | 0.56 | 0.53 | 0.54 | 0.58 | 0.52 | 0.47 | 0.52 | 0.55 | 0.55 | 0.56 | 0.49 | 0.59 |
Plier | Raw | Student | 0.51 | 0.59 | 0.48 | 0.41 | 0.52 | 0.49 | 0.40 | 0.43 | 0.57 | 0.59 | 0.56 | 0.56 | 0.46 | 0.49 |
 |  | Win. t | 0.58 | 0.64 | 0.54 | 0.49 | 0.59 | 0.58 | 0.52 | 0.51 | 0.62 | 0.64 | 0.62 | 0.62 | 0.56 | 0.60 |
 |  | Reg. t | 0.56 | 0.64 | 0.54 | 0.52 | 0.58 | 0.58 | 0.52 | 0.51 | 0.61 | 0.65 | 0.60 | 0.62 | 0.55 | 0.60 |
dChip Li-Wong MBEI | PM | Student | 0.46 | 0.49 | 0.41 | 0.43 | 0.48 | 0.47 | 0.41 | 0.36 | 0.31 | 0.44 | 0.41 | 0.49 | 0.40 | 0.49 |
 | Norm | Win. t | 0.54 | 0.55 | 0.49 | 0.51 | 0.55 | 0.56 | 0.50 | 0.47 | 0.39 | 0.52 | 0.50 | 0.58 | 0.47 | 0.58 |
 |  | Reg. t | 0.48 | 0.51 | 0.45 | 0.51 | 0.53 | 0.52 | 0.46 | 0.41 | 0.30 | 0.49 | 0.45 | 0.55 | 0.41 | 0.55 |
RMA Median-polish | Norm | Student | 0.54 | 0.55 | 0.55 | 0.46 | 0.52 | 0.54 | 0.44 | 0.46 | 0.45 | 0.52 | 0.48 | 0.52 | 0.49 | 0.52 |
 |  | Win. t | 0.64 | 0.64 | 0.64 | 0.56 | 0.62 | 0.65 | 0.56 | 0.58 | 0.57 | 0.64 | 0.59 | 0.63 | 0.59 | 0.64 |
 |  | Reg. t | 0.65 | 0.66 | 0.66 | 0.60 | 0.64 | 0.66 | 0.58 | 0.60 | 0.59 | 0.67 | 0.62 | 0.65 | 0.61 | 0.67 |
GCRMA Median-polish | Raw | Student | 0.58 | 0.61 | 0.57 | 0.46 | 0.52 | 0.60 | 0.43 | 0.60 | 0.49 | 0.63 | 0.54 | 0.65 | 0.48 | 0.57 |
 |  | Win. t | 0.63 | 0.64 | 0.59 | 0.49 | 0.56 | 0.64 | 0.49 | 0.64 | 0.54 | 0.67 | 0.61 | 0.68 | 0.54 | 0.63 |
 |  | Reg. t | 0.63 | 0.65 | 0.60 | 0.52 | 0.56 | 0.65 | 0.52 | 0.65 | 0.52 | 0.68 | 0.62 | 0.69 | 0.52 | 0.64 |
 | Norm | Student | 0.50 | 0.49 | 0.48 | 0.46 | 0.49 | 0.51 | 0.47 | 0.51 | 0.47 | 0.50 | 0.48 | 0.51 | 0.47 | 0.49 |
 |  | Win. t | 0.60 | 0.59 | 0.59 | 0.55 | 0.57 | 0.61 | 0.54 | 0.60 | 0.56 | 0.61 | 0.58 | 0.60 | 0.56 | 0.61 |
 |  | Reg. t | 0.59 | 0.61 | 0.61 | 0.59 | 0.59 | 0.62 | 0.56 | 0.63 | 0.58 | 0.64 | 0.60 | 0.63 | 0.57 | 0.62 |