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Table 3 Comparison of performances of different methods on heterogeneous models

From: SNPInterForest: A new method for detecting epistatic interactions

  SNPInterForest BOOST SNPHarvester
  # of true positives
(N total = 100)
# of false positives # of true positives
(N total = 100)
# of false positives # of true positives
(N total = 100)
# of false positives
h2 = 0.4, MAF = 0.2 98 1 98 5 64 0
h2 = 0.4, MAF = 0.4 98 0 100 7 66 1
h2 = 0.3, MAF = 0.2 90 1 81 6 59 0
h2 = 0.3, MAF = 0.4 80 0 100 7 62 0
h2 = 0.2, MAF = 0.2 28 4 16 10 19 0
h2 = 0.2, MAF = 0.4 38 1 78 3 29 2