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Table 4 Fit parameters for (FQPS) and (RQGS)

From: Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling

   FQPS corresponding RQGS
L Q L S λ 10 4 λ 2 K λ 10 4 λ 2 K
P08100 50     0.3016 ± 0.40% 7.5741 ± 0.77% 0.0654 ± 3.34%
348 100 0.1747 ± 0.19% 3.2202 ± 0.32% 0.0132 ± 1.49% 0.2829 ± 0.17% 3.6884 ± 0.36% 0.0463 ± 4.09%
  200 0.1617 ± 0.09% 1.7968 ± 0.18% 0.0100 ± 1.31% 0.2685 ± 0.15% 1.8498 ± 0.40% 0.0315 ± 2.77%
  300 0.1478 ± 0.14% 1.3962 ± 0.21% 0.0059 ± 2.20% 0.2664 ± 0.14% 1.1900 ± 0.47% 0.0292 ± 3.49%
  320 0.1466 ± 0.15% 1.3775 ± 0.28% 0.0056 ± 2.33% 0.2674 ± 0.11% 1.1059 ± 0.51% 0.0295 ± 2.05%
  348 0.1432 ± 0.22% 1.4131 ± 0.33% 0.0051 ± 2.69% 0.2681 ± 0.10% 0.9909 ± 0.43% 0.0307 ± 2.18%
  360 0.1426 ± 0.17% 1.4322 ± 0.22% 0.0047 ± 3.17% 0.2678 ± 0.10% 0.9883 ± 0.42% 0.0302 ± 2.49%
  400 0.1418 ± 0.10% 1.4201 ± 0.17% 0.0047 ± 1.43% 0.2648 ± 0.12% 1.0238 ± 0.50% 0.0248 ± 3.89%
  500 0.1399 ± 0.26% 1.4517 ± 0.35% 0.0043 ± 3.94% 0.2638 ± 0.17% 1.0248 ± 0.65% 0.0255 ± 5.65%
  600 0.1405 ± 0.16% 1.4392 ± 0.20% 0.0047 ± 2.87% 0.2650 ± 0.14% 0.9917 ± 0.74% 0.0245 ± 3.85%
P50052 50     0.3024 ± 0.85% 7.4294 ± 1.70% 0.0657 ± 6.19%
363 100 0.1795 ± 0.16% 3.1869 ± 0.26% 0.0132 ± 1.42% 0.2818 ± 0.25% 3.6993 ± 0.55% 0.0458 ± 3.44%
  200 0.1660 ± 0.18% 1.8701 ± 0.30% 0.0096 ± 1.98% 0.2698 ± 0.21% 1.8027 ± 0.58% 0.0341 ± 4.60%
  300 0.1550 ± 0.22% 1.3995 ± 0.36% 0.0066 ± 2.97% 0.2643 ± 0.14% 1.2232 ± 0.42% 0.0273 ± 3.55%
  330 0.1512 ± 0.12% 1.4130 ± 0.23% 0.0057 ± 1.30% 0.2654 ± 0.18% 1.0822 ± 0.68% 0.0274 ± 5.32%
  363 0.1509 ± 0.18% 1.3881 ± 0.27% 0.0057 ± 3.53% 0.2687 ± 0.24% 0.9676 ± 1.00% 0.0332 ± 7.75%
  380 0.1489 ± 0.12% 1.4138 ± 0.19% 0.0051 ± 1.17% 0.2651 ± 0.30% 0.9806 ± 1.28% 0.0270 ± 11.76%
  400 0.1474 ± 0.20% 1.4335 ± 0.32% 0.0048 ± 3.27% 0.2634 ± 0.15% 0.9773 ± 0.75% 0.0271 ± 11.41%
  500 0.1471 ± 0.08% 1.4350 ± 0.16% 0.0049 ± 1.13% 0.2613 ± 0.21% 0.9998 ± 1.05% 0.0226 ± 7.60%
  600 0.1457 ± 0.28% 1.4640 ± 0.54% 0.0046 ± 3.24% 0.2662 ± 0.15% 0.9498 ± 0.79% 0.0250 ± 7.76%
Q18179 50     0.3008 ± 0.70% 7.6673 ± 1.23% 0.0625 ± 5.34%
455 100 0.1798 ± 0.33% 3.7190 ± 0.59% 0.0103 ± 2.84% 0.2845 ± 0.16% 3.5814 ± 0.35% 0.0485 ± 2.86%
  200 0.1723 ± 0.16% 1.9839 ± 0.32% 0.0087 ± 1.50% 0.2685 ± 0.14% 1.8391 ± 0.49% 0.0302 ± 3.81%
  300 0.1609 ± 0.25% 1.4302 ± 0.40% 0.0059 ± 4.49% 0.2632 ± 0.16% 1.2382 ± 0.53% 0.0262 ± 4.69%
  420 0.1569 ± 0.27% 1.3665 ± 0.52% 0.0050 ± 2.90% 0.2636 ± 0.17% 0.8441 ± 0.59% 0.0222 ± 9.17%
  450 0.1590 ± 0.25% 1.3225 ± 0.61% 0.0052 ± 2.86% 0.2611 ± 0.13% 0.8203 ± 0.43% 0.0209 ± 4.93%
  455 0.1548 ± 0.26% 1.4038 ± 0.52% 0.0049 ± 2.76% 0.2655 ± 0.12% 0.7670 ± 0.49% 0.0246 ± 8.35%
  480 0.1557 ± 0.38% 1.3664 ± 0.67% 0.0051 ± 7.10% 0.2610 ± 0.10% 0.7929 ± 0.41% 0.0197 ± 6.70%
  500 0.1521 ± 0.45% 1.4145 ± 0.77% 0.0044 ± 5.30% 0.2615 ± 0.17% 0.7783 ± 0.62% 0.0204 5.09%
  600 0.1540 ± 0.25% 1.3886 ± 0.43% 0.0043 ± 3.72% 0.2596 ± 0.14% 0.7706 ± 0.60% 0.0174 ± 5.71%
P35348 50     0.3046 ± 0.61% 7.3443 ± 1.17% 0.0668 ± 4.85%
466 100 0.1809 ± 0.18% 3.1996 ± 0.28% 0.0135 ± 2.06% 0.2839 ± 0.22% 3.6314 ± 0.49% 0.0465 ± 2.49%
  200 0.1625 ± 0.12% 1.8687 ± 0.18% 0.0079 ± 1.63% 0.2696 ± 0.15% 1.8030 ± 0.48% 0.0315 ± 3.97%
  300 0.1643 ± 0.10% 1.2089 ± 0.15% 0.0086 ± 2.23% 0.2620 ± 0.13% 1.2472 ± 0.47% 0.0241 ± 5.52%
  400 0.1510 ± 0.24% 1.2641 ± 0.39% 0.0051 ± 2.76%    
  450 0.1521 ± 0.33% 1.2357 ± 0.55% 0.0050 ± 5.39% 0.2647 ± 0.16% 0.7874 ± 0.67% 0.0246 ± 3.93%
  466 0.1485 ± 0.17% 1.2982 ± 0.35% 0.0046 ± 2.93%    
  480 0.1517 ± 0.23% 1.2359 ± 0.34% 0.0056 ± 5.27% 0.2609 ± 0.25% 0.7981 ± 1.25% 0.0207 ± 9.36%
  500 0.1492 ± 0.22% 1.2845 ± 0.35% 0.0048 ± 3.64% 0.2668 ± 0.09% 0.7124 ± 0.49% 0.0265 ± 6.00%
  600 0.1509 ± 0.28% 1.2383 ± 0.40% 0.0050 ± 3.86%    
  1. Fit parameters λ, λ2 and K of the modified Gumbel distribution for (FQPS) and (RQGS).
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BMC Bioinformatics

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