Skip to main content

Table 10 TC scores for different weights of secondary structures on the SABmark benchmark. Bold denotes the two best scores, and an extra superscript of star denotes the highest score.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

w2

0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

0.9

1

TC

39.948

42.643

45.262

47.442

48.754

49.005 *

48.745

48.352

47.142

45.4923

43.385

  1. The results show that using secondary structure information (i.e. w2 > 0) always increases the alignment scores over without using it (i.e. w2 = 0). MSACompro yielded the highest accuracy score of ~68.70 when w2 is set to 0.5.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us