MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

Table 15 SP scores for different weight combinations (w₁ - amino acid, w₂ - secondary structure, w₃ - solvent accessibility) on the SABmark 1.65 dataset.

w₂\w₁	0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1
0	61.723	63.188	64.388	65.037	65.249	65.199	65.124	64.171	63.260	61.753	60.553
0.1	63.303	64.600	65.635	66.492	66.702	66.619	66.423	65.717	64.790	62.988
0.2	64.759	66.055	67.161	67.598	68.104	67.831	67.469	66.775	65.514
0.3	65.781	66.974	67.867	68.312	68.414	68.418	68.033	67.333
0.4	66.424	67.531	68.251	68.743	69.016 ¹	68.920 ²	68.3475
0.5	66.847	67.907	68.4	68.859	68.933 ³	68.698
0.6	66.843	67.911	68.544	68.560	68.465
0.7	66.739	67.800	68.135	68.159
0.8	66.389	67.119	67.282
0.9	65.445	66.153
1	64.745

Bold denotes the top 3 highest scores. The highest score is indicated by a superscript of 1, the second highest by a superscript of 2, and the third highest by a superscript of 3. The table only shows the values of w₁ and w₂ because w₃ can be inferred by 1 - w₁ - w₂.

ISSN: 1471-2105