MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

Table 17 SP scores for different contact map weight w_c on the BAliBASE3.0 database while keeping the weights for amino acid, secondary structure, solvent accessibility to 0.4, 0.5, and 0.1, respectively.

subset\the weight w_c	0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1
RV11	0.729	0.730	0.728	0.726	0.726	0.726	0.727	0.72547	0.732	0.731	0.722
RV12	0.947	0.948	0.947	0.949	0.948	0.948	0.948	0.94855	0.948	0.948	0.945
RV20	0.934	0.933	0.932	0.934	0.934	0.934	0.933	0.93282	0.9332	0.933	0.934
RV30	0.876	0.877	0.877	0.876	0.873	0.873	0.873	0.87287	0.873	0.872	0.846
RV40	0.909	0.908	0.909	0.909	0.909	0.909	0.909	0.909	0.909	0.921	0.913
RV50	0.911	0.910	0.911	0.909	0.909	0.908	0.902	0.90807	0.914	0.914	0.871

ISSN: 1471-2105