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Table 17 SP scores for different contact map weight wc on the BAliBASE3.0 database while keeping the weights for amino acid, secondary structure, solvent accessibility to 0.4, 0.5, and 0.1, respectively.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

subset\the weight wc 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1
RV11 0.729 0.730 0.728 0.726 0.726 0.726 0.727 0.72547 0.732 0.731 0.722
RV12 0.947 0.948 0.947 0.949 0.948 0.948 0.948 0.94855 0.948 0.948 0.945
RV20 0.934 0.933 0.932 0.934 0.934 0.934 0.933 0.93282 0.9332 0.933 0.934
RV30 0.876 0.877 0.877 0.876 0.873 0.873 0.873 0.87287 0.873 0.872 0.846
RV40 0.909 0.908 0.909 0.909 0.909 0.909 0.909 0.909 0.909 0.921 0.913
RV50 0.911 0.910 0.911 0.909 0.909 0.908 0.902 0.90807 0.914 0.914 0.871
  1. Bold denotes the increased scores.