Skip to main content

Table 3 Overall mean SP and TC scores on the full-length BAliBASE 3.0 subsets.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

MSA tools Mean SP score Mean TC score
MSACompro 88.846 61.313
Clustalw 74.980 37.161
DIALIGN-TX 78.48 44.10
FSA 77.878 41.688
MAFFT 81.112 46.028
MSAProbs 87.336 60.248
MUSCLE 81.496 47.151
Opal 82.030 51.789
POA 71.795 33.165
Probalign 87.161 58.528
ProbCons 85.965 55.422
T-coffee 85.728 55.239
  1. Bold denotes the highest scores. MSACompro has the highest mean SP and TC scores.